Publications

Hardy M, Harris PNA, Paterson DL, Chatfield MD, Mo Y; MERINO Trial Investigators.
Win Ratio Analyses of Piperacillin-Tazobactam Versus Meropenem for Ceftriaxone-Nonsusceptible Escherichia coli or Klebsiella pneumoniae Bloodstream Infections: Post Hoc Insights From the MERINO Trial
Clin Infect Dis. 2024 Jun 14;78(6):1482-1489. doi: 10.1093/cid/ciae050.
Smith TP, Mishra S, Dorigatti I, Dixit MK, Tristem M, Pearse WD.
Differential responses of SARS-CoV-2 variants to environmental drivers during their selective sweeps
Sci Rep. 2024 Jun 10;14(1):13326. doi: 10.1038/s41598-024-64044-1.
Ting R, Dickens BL, Hanley R, Cook AR, Ismail E.
The epidemiologic and economic burden of dengue in Singapore: A systematic review
PLoS Negl Trop Dis. 2024 Jun 10;18(6):e0012240. doi: 10.1371/journal.pntd.0012240. eCollection 2024 Jun.
Anelone AJN, Clapham HE.
Measles Infection Dose Responses: Insights from Mathematical Modeling
Bull Math Biol. 2024 Jun 9;86(7):85. doi: 10.1007/s11538-024-01305-0.
Trujillano F, Jimenez G, Manrique E, Kahamba NF, Okumu F, Apollinaire N, Carrasco-Escobar G, Barrett B, Fornace K.
Using image segmentation models to analyse high-resolution earth observation data: new tools to monitor disease risks in changing environments
Int J Health Geogr. 2024 May 19;23(1):13. doi: 10.1186/s12942-024-00371-w.
Akoi Boré J, Timothy JWS, Tipton T, Kekoura I, Hall Y, Hood G, Longet S, Fornace K, Lucien MS, Fehling SK, Koivogui BK, Coggins SA, Laing ED, Broder CC, Magassouba NF, Strecker T, Rossman J, Konde K, Carroll MW.
Serological evidence of zoonotic filovirus exposure among bushmeat hunters in Guinea
Nat Commun. 2024 May 16;15(1):4171. doi: 10.1038/s41467-024-48587-5.
Johnson E, Sunil Kumar Sharma R, Ruiz Cuenca P, Byrne I, Salgado-Lynn M, Suraya Shahar Z, Col Lin L, Zulkifli N, Dilaila Mohd Saidi N, Drakeley C, Matthiopoulos J, Nelli L, Fornace K.
Landscape drives zoonotic malaria prevalence in non-human primates
Elife. 2024 May 16;12:RP88616. doi: 10.7554/eLife.88616.
Durrance-Bagale A, Hoe N, Lai J, Liew JWK, Clapham H, Howard N.
Dengue vector control in high-income, city settings: A scoping review of approaches and methods
PLoS Negl Trop Dis. 2024 Apr 17;18(4):e0012081. doi: 10.1371/journal.pntd.0012081. eCollection 2024 Apr.
Endo A.
‘Not finding causal effect’ is not ‘finding no causal effect’ of school closure on COVID-19
F1000Res. 2024 Apr 16;11:456. doi: 10.12688/f1000research.111915.2. eCollection 2022.
Jin S, Tay M, Ng LC, Wong JCC, Cook AR.
Combining wastewater surveillance and case data in estimating the time-varying effective reproduction number
Sci Total Environ. 2024 Jun 10;928:172469. doi: 10.1016/j.scitotenv.2024.172469. Epub 2024 Apr 16.
Jit M, Cook AR.
Informing Public Health Policies with Models for Disease Burden, Impact Evaluation, and Economic Evaluation
Annu Rev Public Health. 2024 May;45(1):133-150. doi: 10.1146/annurev-publhealth-060222-025149. Epub 2024 Apr 3.
Hartner AM, Li X, Echeverria-Londono S, Roth J, Abbas K, Auzenbergs M, de Villiers MJ, Ferrari MJ, Fraser K, Fu H, Hallett T, Hinsley W, Jit M, Karachaliou A, Moore SM, Nayagam S, Papadopoulos T, Perkins TA, Portnoy A, Minh QT, Vynnycky E, Winter AK, Burrows H, Chen C, Clapham HE, Deshpande A, Hauryski S, Huber J, Jean K, Kim C, Kim JH, Koh J, Lopman BA, Pitzer VE, Tam Y, Lambach P, Sim SY, Woodruff K, Ferguson NM, Trotter CL, Gaythorpe KAM.
Estimating the health effects of COVID-19-related immunisation disruptions in 112 countries during 2020-30: a modelling study
Lancet Glob Health. 2024 Apr;12(4):e563-e571. doi: 10.1016/S2214-109X(23)00603-4.
Jin S, Dickens BL, Toh KY, Lye DCB, Lee VJ, Cook AR.
Feasibility of wastewater-based detection of emergent pandemics through a global network of airports
PLOS Glob Public Health. 2024 Mar 13;4(3):e0003010. doi: 10.1371/journal.pgph.0003010. eCollection 2024.
Abbas K, Yoo KJ, Prem K, Jit M.
Equity impact of HPV vaccination on lifetime projections of cervical cancer burden among cohorts in 84 countries by global, regional, and income levels, 2010-22: a modelling study
EClinicalMedicine. 2024 Mar 11;70:102524. doi: 10.1016/j.eclinm.2024.102524. eCollection 2024 Apr.
Gan G, Janhavi A, Tong G, Lim JT, Dickens BL.
The need for pre-emptive control strategies for mpox in Asia and Oceania
Infect Dis Model. 2023 Dec 28;9(1):214-223. doi: 10.1016/j.idm.2023.12.005. eCollection 2024 Mar.
Tan RY, Dickens B, Tan J, Lee CL, Wong B, Lim R, Tan KB, Wee LE.
Oral antiviral utilisation among older adults with COVID-19 in primary care: A population-wide study during successive Omicron waves in Singapore
Ann Acad Med Singap. 2024 Feb 28;53(2):117-120. doi: 10.47102/annals-acadmedsg.2023297.
Chen Y, Nguyet LA, Nhan LNT, Qui PT, Nhu LNT, Hong NTT, Ny NTH, Anh NT, Thanh LK, Phuong HT, Vy NHT, Thanh NTL, Khanh TH, Hung NT, Viet DC, Nam NT, Chau NVV, van Doorn HR, Tan LV, Clapham H.
Age-time-specific transmission of hand-foot-and-mouth disease enterovirus serotypes in Vietnam: A catalytic model with maternal immunity
Epidemics. 2024 Mar;46:100754. doi: 10.1016/j.epidem.2024.100754. Epub 2024 Feb 27.
Zhao R, Fairley CK, Cook AR, Phanuphak N, He S, Tieosapjaroen W, Chow EPF, Phillips TR, Jin Tan RK, Wei Y, Shen M, Zhuang G, Ong JJ, Zhang L.
Optimising HIV pre-exposure prophylaxis and testing strategies in men who have sex with men in Australia, Thailand, and China: a modelling study and cost-effectiveness analysis
Lancet Glob Health. 2024 Feb;12(2):e243-e256. doi: 10.1016/S2214-109X(23)00536-3.
Lim JT, Bansal S, Chong CS, Dickens B, Ng Y, Deng L, Lee C, Tan LY, Chain G, Ma P, Sim S, Tan CH, Cook AR, Ng LC.
Efficacy of Wolbachia-mediated sterility to reduce the incidence of dengue: a synthetic control study in Singapore
Lancet Microbe. 2024 May;5(5):e422-e432. doi: 10.1016/S2666-5247(23)00397-X. Epub 2024 Feb 8.
Kang H, Auzenbergs M, Clapham H, Maure C, Kim JH, Salje H, Taylor CG, Lim A, Clark A, Edmunds WJ, Sahastrabuddhe S, Brady OJ, Abbas K.
Chikungunya seroprevalence, force of infection, and prevalence of chronic disability after infection in endemic and epidemic settings: a systematic review, meta-analysis, and modelling study
Lancet Infect Dis. 2024 May;24(5):488-503. doi: 10.1016/S1473-3099(23)00810-1. Epub 2024 Feb 8.
Jin S, Lin L, Larson HJ, Cook AR.
COVID-19 vaccine acceptance and its associated factors in the Western Pacific Region
Lancet Reg Health West Pac. 2024 Feb 12;43:100840. doi: 10.1016/j.lanwpc.2023.100840. eCollection 2024 Feb.
Maluda MCM, Johnson E, Robinson F, Jikal M, Fong SY, Saffree MJ, Fornace KM, Ahmed K.
The incidence, and spatial trends of cholera in Sabah over 15 years: Repeated outbreaks in coastal areas
PLOS Glob Public Health. 2024 Jan 30;4(1):e0002861. doi: 10.1371/journal.pgph.0002861. eCollection 2024.
Ng DHL, Chia TRT, Young BE, Sadarangani S, Puah SH, Low JGH, Yan GZ, Mo Y, Ngiam NJ, Wang SSY, Loo YT, Ong FEJQ, Li AY, Ho S, Ng L, Tambyah PA, Yeo TW.
Study protocol: infectious diseases consortium (I3D) for study on integrated and innovative approaches for management of respiratory infections: respiratory infections research and outcome study (RESPIRO)
BMC Infect Dis. 2024 Jan 23;24(1):123. doi: 10.1186/s12879-023-08795-8.
Mo Y, Booraphun S, Li AY, Domthong P, Kayastha G, Lau YH, Chetchotisakd P, Limmathurotsakul D, Tambyah PA, Cooper BS; REGARD-VAP investigators.
Individualised, short-course antibiotic treatment versus usual long-course treatment for ventilator-associated pneumonia (REGARD-VAP): a multicentre, individually randomised, open-label, non-inferiority trial
Lancet Respir Med. 2024 May;12(5):399-408. doi: 10.1016/S2213-2600(23)00418-6. Epub 2024 Jan 22.
Sherratt K, Carnegie AC, Kucharski A, Cori A, Pearson CAB, Jarvis CI, Overton C, Weston D, Hill EM, Knock E, Fearon E, Nightingale E, Hellewell J, Edmunds WJ, Villabona Arenas J, Prem K, Pi L, Baguelin M, Kendall M, Ferguson N, Davies N, Eggo RM, van Elsland S, Russell T, Funk S, Liu Y, Abbott S.
Improving modelling for epidemic responses: reflections from members of the UK infectious disease modelling community on their experiences during the COVID-19 pandemic
Wellcome Open Res. 2024 Jan 8;9:12. doi: 10.12688/wellcomeopenres.19601.1. eCollection 2024.
Murayama H, Nishi A, Endo A.
Different time scales used for sexual partner surveys pose a challenge in modelling dynamics of sexually transmitted infections
medRxiv [Preprint]. 2023 Dec 28:2023.12.25.23300526. doi: 10.1101/2023.12.25.23300526.
Tewari P, Ma P, Gan G, Janhavi A, Choo ELW, Koo JR, Dickens BL, Lim JT.
Non-linear associations between meteorological factors, ambient air pollutants and major mosquito-borne diseases in Thailand
PLoS Negl Trop Dis. 2023 Dec 27;17(12):e0011763. doi: 10.1371/journal.pntd.0011763. eCollection 2023 Dec.
Kundu R, Datta J, Ray D, Mishra S, Bhattacharyya R, Zimmermann L, Mukherjee B.
Comparative impact assessment of COVID-19 policy interventions in five South Asian countries using reported and estimated unreported death counts during 2020-2021
PLOS Glob Public Health. 2023 Dec 27;3(12):e0002063. doi: 10.1371/journal.pgph.0002063. eCollection 2023.
Wee LE, Lim JT, Tay AT, Pang D, Dickens B, Chiew CJ, Ong B, Lye DCB, Tan KB.
Long-term neuropsychiatric sequelae of Delta versus Omicron SARS-CoV-2 infection
Clin Microbiol Infect. 2024 Apr;30(4):531-539. doi: 10.1016/j.cmi.2023.12.019. Epub 2023 Dec 22.
Pronyk PM, de Alwis R, Rockett R, Basile K, Boucher YF, Pang V, Sessions O, Getchell M, Golubchik T, Lam C, Lin R, Mak TM, Marais B, Twee-Hee Ong R, Clapham HE, Wang L, Cahyorini Y, Polotan FGM, Rukminiati Y, Sim E, Suster C, Smith GJD, Sintchenko V.
Advancing pathogen genomics in resource-limited settings
Cell Genom. 2023 Nov 17;3(12):100443. doi: 10.1016/j.xgen.2023.100443. eCollection 2023 Dec 13.
Fung T, Clapham HE, Chisholm RA.
Temporary Cross-Immunity as a Plausible Driver of Asynchronous Cycles of Dengue Serotypes
Bull Math Biol. 2023 Nov 14;85(12):124. doi: 10.1007/s11538-023-01226-4.
Naserrudin NA, Lin PYP, Monroe A, Baumann SE, Adhikari B, Miller AC, Sato S, Fornace KM, Culleton R, Cheah PY, Hod R, Jeffree MS, Ahmed K, Hassan MR.
Disentangling the intersection of inequities with health and malaria exposure: key lessons from rural communities in Northern Borneo
Malar J. 2023 Nov 9;22(1):343. doi: 10.1186/s12936-023-04750-9.
Murayama H, Endo A, Yonekura S.
Estimation of waning vaccine effectiveness from population-level surveillance data in multi-variant epidemics
Epidemics. 2023 Dec;45:100726. doi: 10.1016/j.epidem.2023.100726. Epub 2023 Nov 4.
Chan CMJ, Dickens BSL, Chong MF.
Understanding knowledge, attitudes and behaviours related to dietary sodium intake in a multi-ethnic population in Singapore
Public Health Nutr. 2023 Dec;26(12):2802-2814. doi: 10.1017/S1368980023002422. Epub 2023 Nov 3.
Lim AY, Jafari Y, Caldwell JM, Clapham HE, Gaythorpe KAM, Hussain-Alkhateeb L, Johansson MA, Kraemer MUG, Maude RJ, McCormack CP, Messina JP, Mordecai EA, Rabe IB, Reiner RC Jr, Ryan SJ, Salje H, Semenza JC, Rojas DP, Brady OJ.
A systematic review of the data, methods and environmental covariates used to map Aedes-borne arbovirus transmission risk
BMC Infect Dis. 2023 Oct 20;23(1):708. doi: 10.1186/s12879-023-08717-8.
Cooper BS, Evans S, Jafari Y, Pham TM, Mo Y, Lim C, Pritchard MG, Pople D, Hall V, Stimson J, Eyre DW, Read JM, Donnelly CA, Horby P, Watson C, Funk S, Robotham JV, Knight GM.
The burden and dynamics of hospital-acquired SARS-CoV-2 in England
Nature. 2023 Nov;623(7985):132-138. doi: 10.1038/s41586-023-06634-z. Epub 2023 Oct 18.
Naserrudin NA, Jiee SF, Habil B, Jantim A, Mohamed AFB, Dony JJF, Ibrahim SSA, Fornace KM, Hassan MR, Jeffree MS, Hod R, Culleton R, Ahmed K.
The public health response to a Plasmodium malariae outbreak in Penampang district, Sabah during a COVID-19 movement control order
Malar J. 2023 Oct 3;22(1):292. doi: 10.1186/s12936-023-04693-1.
Fornace KM, Drakeley CJ, Lindblade KA, Jelip J, Ahmed K.
Zoonotic malaria requires new policy approaches to malaria elimination
Nat Commun. 2023 Sep 16;14(1):5750. doi: 10.1038/s41467-023-41546-6.
Tewari P, Guo P, Dickens B, Ma P, Bansal S, Lim JT.
Associations between Dengue Incidence, Ecological Factors, and Anthropogenic Factors in Singapore
Viruses. 2023 Sep 13;15(9):1917. doi: 10.3390/v15091917.
Sheikh N, Sultana M, Sarker AR, Morton A.
Equity assessment of maternal and child healthcare benefits utilization and distribution in public healthcare facilities in Bangladesh: a benefit incidence analysis
Popul Health Metr. 2023 Sep 5;21(1):12. doi: 10.1186/s12963-023-00312-y.
De Foo C, Wu S, Amin F, Rajaraman N, Cook AR, Legido-Quigley H.
A qualitative exploration of factors that influence the uptake of tuberculosis services by low-skilled migrant workers in Singapore
BMC Health Serv Res. 2023 Sep 2;23(1):943. doi: 10.1186/s12913-023-09938-y.
Jin S, Dickens BL, Lim JT, Cook AR.
EpiMix: A novel method to estimate effective reproduction number
Infect Dis Model. 2023 Jun 20;8(3):704-716. doi: 10.1016/j.idm.2023.06.002. eCollection 2023 Sep.
Prem K, Choi YH, Bénard É, Burger EA, Hadley L, Laprise JF, Regan MC, Drolet M, Sy S, Abbas K, Portnoy A, Kim JJ, Brisson M, Jit M.
Global impact and cost-effectiveness of one-dose versus two-dose human papillomavirus vaccination schedules: a comparative modelling analysis
BMC Med. 2023 Aug 28;21(1):313. doi: 10.1186/s12916-023-02988-3.
Wong YHM, Lim JT, Griffiths J, Lee B, Maliki D, Thompson J, Wong M, Chae SR, Teoh YL, Ho ZJM, Lee V, Cook AR, Tay M, Wong JCC, Ng LC.
Positive association of SARS-CoV-2 RNA concentrations in wastewater and reported COVID-19 cases in Singapore – A study across three populations
Sci Total Environ. 2023 Dec 1;902:166446. doi: 10.1016/j.scitotenv.2023.166446. Epub 2023 Aug 19.
Park SH, Lee YQ, Müller-Riemenschneider F, Dickens BSL, van Dam RM.
Acculturation as a Determinant of Obesity and Related Lifestyle Behaviors in a Multi-Ethnic Asian Population
Nutrients. 2023 Aug 17;15(16):3619. doi: 10.3390/nu15163619.
Mo Y, Ding Y, Cao Y, Hopkins J, Ashley EA, Waithira N, Wannapinij P, Lee SJ, Ling CL, Hamers RL, Roberts T, Lubell Y, Karkey A, Akech S, Lissauer S, Opintan J, Okeke I, Eremin S, Tornimbene B, Hsu LY, Thwaites L, Lam MY, Pham NT, Pham TK, Teo J, Kwa AL, Marimuthu K, Ng OT, Vasoo S, Kitsaran S, Anunnatsiri S, Kosalaraksa P, Chotiprasitsakul D, Santanirand P, Plongla R, Chua HH, Tiong XT, Wong KJ, Ponnampalavanar SSS, Sulaiman HB, Mazlan MZ, Salmuna ZN, Rajahram GS, Zaili MZBM, Francis JR, Sarmento N, Guterres H, Oakley T, Yan J, Tilman A, Khalid MOR, Hashmi M, Mahmood SF, Dhiloo AK, Fatima A, Lubis IND, Wijaya H, Abad CL, Roman AD, Lazarte CCM, Mamun GMS, Asli R, Momin MHFBHA, Nyamdavaa K, Gurjav U, Bory S, Varghese GM, Gupta L, Tantia P, Sinto R, Doi Y, Khanal B, Malijan G, Lazaro J, Gunasekara S, Withanage S, Liu PY, Xiao Y, Wang M, Paterson DL, van Doorn HR, Turner P.
ACORN (A Clinically-Oriented Antimicrobial Resistance Surveillance Network) II: protocol for case based antimicrobial resistance surveillance
Wellcome Open Res. 2023 Aug 16;8:179. doi: 10.12688/wellcomeopenres.19210.2. eCollection 2023.
Ko YK, Furuse Y, Otani K, Yamauchi M, Ninomiya K, Saito M, Imamura T, Cook AR, Ahiko T, Fujii S, Mori Y, Suzuki E, Yamada K, Ashino Y, Yamashita H, Kato Y, Mizuta K, Suzuki M, Oshitani H.
Time-varying overdispersion of SARS-CoV-2 transmission during the periods when different variants of concern were circulating in Japan
Sci Rep. 2023 Aug 14;13(1):13230. doi: 10.1038/s41598-023-38007-x.
Hawryluk I, Mishra S, Flaxman S, Bhatt S, Mellan TA.
Application of referenced thermodynamic integration to Bayesian model selection
PLoS One. 2023 Aug 14;18(8):e0289889. doi: 10.1371/journal.pone.0289889. eCollection 2023.
Byrne I, William T, Chua TH, Patterson C, Hall T, Tan M, Chitnis C, Adams J, Singh SK, Grignard L, Tetteh KKA, Fornace KM, Drakeley CJ.
Serological evaluation of risk factors for exposure to malaria in a pre-elimination setting in Malaysian Borneo
Sci Rep. 2023 Aug 10;13(1):12998. doi: 10.1038/s41598-023-39670-w.
Katsiferis A, Bhatt S, Mortensen LH, Mishra S, Jensen MK, Westendorp RGJ.
Machine learning models of healthcare expenditures predicting mortality: A cohort study of spousal bereaved Danish individuals
PLoS One. 2023 Aug 7;18(8):e0289632. doi: 10.1371/journal.pone.0289632. eCollection 2023.
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