Publications

Dabira ED, Natama HM, Jaiteh F, Grietens KP, Bocoum FY, Ndiath MO, Mohammed N, Gibba B, Hill AVS, Ghani A, Erhart A, Tinto H, D'Alessandro U.
Seasonal mass vaccination with R21/Matrix-M for malaria elimination (SERVAL): protocol of the cluster randomised trial
Trials. 2025 Sep 29;26(1):382. doi: 10.1186/s13063-025-09048-6.
Perez RL, Chung The H, Vignesvaran K, Tan WC, Chua MSH, Tan EY, Peng SY, Zhou L, Singh SR, Yeung W, Seah I, Teo J, Aung KT, Tang CY, Ong RT, Cooper BS, Banerjee R, Tambyah PA, Mo Y.
Transmission dynamics of Escherichia coli sequence type 131 in households-a one health prospective cohort study
Nat Commun. 2025 Sep 26;16(1):8455. doi: 10.1038/s41467-025-63121-x.
Whittaker C, Barnsley G, Mesa DO, Cox V, Laydon DJ, Tan CW, Zhu F, Johnson R, Doohan P, Whittles LK, Nedjati-Gilani G, Winskill P, Hogan AB, Deol A, Mukandavire C, Hauck K, Lye DCB, Wang LF, Watson OJ, Ghani AC.
Quantifying the impact of a broadly protective sarbecovirus vaccine in a future SARS-X pandemic
Nat Commun. 2025 Sep 26;16(1):8495. doi: 10.1038/s41467-025-63399-x.
Djaafara BA, Adrian V, Eriawati E, Elyazar IRF, Hamers RL, Baird JK, Thwaites GE, Clapham HE.
Modeling the transmission dynamics and control strategies during the 2017 diphtheria outbreak in Jakarta, Indonesia
Infect Dis Model. 2025 Aug 21;11(1):1-15. doi: 10.1016/j.idm.2025.08.004. eCollection 2026 Mar.
Nakamura T, Kinoshita R, Endo A, Atkins KE, Oshitani H, Ibuka Y, Suzuki M, Ariyoshi K, O'Reilly KM.
Continuing to be cautious: Japanese contact patterns during the COVID-19 pandemic and their association with public health recommendations
PLOS Glob Public Health. 2025 Sep 24;5(9):e0004600. doi: 10.1371/journal.pgph.0004600. eCollection 2025.
Howard A, Reza N, Green PL, Yin M, Duffy E, Mwandumba HC, Gerada A, Hope W.
Artificial intelligence and infectious diseases: tackling antimicrobial resistance, from personalised care to antibiotic discovery
Lancet Infect Dis. 2025 Sep 16:S1473-3099(25)00313-5. doi: 10.1016/S1473-3099(25)00313-5. Online ahead of print.
Jin S, Asakura TR, Murayama H, Niyukuri D, Saila-Ngita D, Lim JT, Endo A, Dickens BL.
Vaccination strategies to achieve outbreak control for MPXV Clade I with a one-time mass campaign in sub-Saharan Africa: A scenario-based modelling study
PLoS Med. 2025 Sep 5;22(9):e1004726. doi: 10.1371/journal.pmed.1004726. eCollection 2025 Sep.
Rohr CM, Park SK, Aguiar-Martins K, Anderson TJC, Berger DJ, Berriman M, Buddenborg SK, Bustinduy AL, Chevalier FD, Cotton JA, Crellen T, Doyle SR, Emery AM, Smith JK, Kinung'hi S, Lamberton PHL, Le Clec'h W, Ndombi E, Pennance T, Rowel C, Summers SS, Tushabe JV, Walker M, Webster BL, Webster JP, Wilson S, Marchant JS.
TRPtracker: a community database for monitoring praziquantel sensitivity at TRPM(PZQ) variants
bioRxiv [Preprint]. 2025 Aug 27:2025.08.27.671753. doi: 10.1101/2025.08.27.671753.
Ith S, Seposo X, Phy V, Tantrakarnapa K, Apostol GLC, Dhewantara PW, Hod R, Hassan MR, Othman H, Sahani M, Lim JT, Nhung HH, Tuan NH, Nghia ND, Takemura T, Nouhak I, Chua PLC, Cook AR, Colón-González FJ, Hashizume M.
Extreme weather events and dengue in Southeast Asia: A regionally-representative analysis of 291 locations from 1998 to 2021
PLoS Negl Trop Dis. 2025 Sep 4;19(9):e0012649. doi: 10.1371/journal.pntd.0012649. eCollection 2025 Sep.
Leung K, Cook AR, Wu JT, McVernon J, Prem K, Jit M, Kingkaew P, Mukhopadhyay S, Isaranuwatchai W, Pan-Ngum W, Teerawattananon Y, Huang A, Djaafara B, Sukmanee J, Phuc TO, Laemlak S, Chua VW, Rattanavipapong W, Dabak SV.
Enhancing global health security responses through greater inclusion of the global south in infectious disease modelling
BMJ Glob Health. 2025 Aug 18;10(8):e019111. doi: 10.1136/bmjgh-2025-019111.
Ejima K, Wang Y, Endo A, Murayama H, Goh YS, Cook AR, Jeong YD, Iwami S, Park H, Dickens BSL, Jin S, Lim JT, Chan CEZ, Chia PY, Young BE, Yang Y, Chio M, Lye DC, Ajelli M.
Evaluating the effectiveness of international travel controls to identify MPXV-infected travelers: a simulation study
BMC Med. 2025 Aug 12;23(1):473. doi: 10.1186/s12916-025-04286-6.
Yang GJ, Song H, Lim JT, Janhavi A, Gan G, Tong G, Ma P, Lim Wei Han N, Bin Mohd Aziz MH, Dickens BL.
Ring vaccination and vector control as control strategies for potential yellow fever outbreak in an Asian city
Infect Dis Model. 2025 Jul 20;10(4):1398-1417. doi: 10.1016/j.idm.2025.07.008. eCollection 2025 Dec.
Genova P, Phung CF, Dickens BL, Lim JM.
Trust in government, science, and vaccine confidence in Southeast Asia: A latent profile analysis
Vaccine. 2025 Aug 30;62:127536. doi: 10.1016/j.vaccine.2025.127536. Epub 2025 Aug 1.
Jung SM, Miura F, Murayama H, Funk S, Wallinga J, Lessler J, Endo A.
Preemptive Mpox Vaccine Deployment: Aligning Strategy With Reality
J Infect Dis. 2025 Nov 14;232(5):e867-e868. doi: 10.1093/infdis/jiaf365.
Murayama H, Asakura TR, Dickens BL, Boyle D, Foo JH, Jin S, Mukadi PK, Ejima K, Jung SM, Nishi A, Prem K, Wakamba AM, Saila-Ngita D, Niyukuri D, Endo A.
Roles of community and sexual contacts as drivers of clade I mpox outbreaks
medRxiv [Preprint]. 2025 Jul 8:2024.10.15.24315554. doi: 10.1101/2024.10.15.24315554.
Kopolrat KY, Worasith C, Wongphutorn P, Techasen A, Eamudomkarn C, Sithithaworn J, Loilome W, Namwat N, Titapun A, Tawarungruang C, Thinkhamrop B, Futrakul S, Taylor-Robinson SD, Haswell MR, Khuntikeo N, Crellen T, Sithithaworn P.
Large-scale epidemiology of opisthorchiasis in 21 provinces in Thailand based on diagnosis by fecal egg examination and urine antigen assay and analysis of risk factors for infection
PLoS Negl Trop Dis. 2025 Jul 16;19(7):e0013095. doi: 10.1371/journal.pntd.0013095. eCollection 2025 Jul.
Asakura TR, Jung SM, Murayama H, Ghaznavi C, Sakamoto H, Teshima A, Miura F, Endo A.
Modelling international spread of clade IIb mpox on the Asian continent
Bull World Health Organ. 2025 Jul 1;103(7):429-436. doi: 10.2471/BLT.24.291815. Epub 2025 Jun 17.
Yam LYE, Chhoun P, Tian Z, Nagashima-Hayashi M, Zahari M, Tuot S, Samreth S, Ngauv B, Ouk V, Prem K, Yi S.
Cost-effectiveness analysis of a community-based model for delivery of antiretroviral therapy to people with clinically stable HIV in Cambodia
J Int AIDS Soc. 2025 Jul;28 Suppl 3(Suppl 3):e26476. doi: 10.1002/jia2.26476.
Tan JXR, Oshitani H, Khanh LP, Jitpeera C, Ferretti L, Cook AR.
Lessons for future outbreaks from successful contact tracing systems in Asia
Lancet Reg Health West Pac. 2025 May 7;58:101563. doi: 10.1016/j.lanwpc.2025.101563. eCollection 2025 May.
Dan S, Ling Z, Chen Y, Tegegne J, Jaeger VK, Karch A, Mishra S, Ratmann O; Machine Learning &Global Health network.
Addressing survey fatigue bias in longitudinal social contact studies to improve pandemic preparedness
Sci Rep. 2025 May 23;15(1):17935. doi: 10.1038/s41598-025-02235-0.
Jin S, Gan G, Endo A, Prem K, Tan RKJ, Lim JT, Ejima K, Dickens BL.
Modelling the potential spread of Clade Ib MPXV in Asian cities
BMJ Public Health. 2025 May 12;3(1):e002285. doi: 10.1136/bmjph-2024-002285. eCollection 2025.
Taie A, Gheorghe M, Amos J, Morton A, Gordon J, Jenkins NC, Padgett TE, Hollinghurst J, Taylor G.
Antimicrobial resistance trends, predictors, and burden in England: a retrospective study using the Clinical Practice Research Datalink from 2015 to 2021
Int J Antimicrob Agents. 2025 Sep;66(3):107535. doi: 10.1016/j.ijantimicag.2025.107535. Epub 2025 May 13.
A J, Gan G, Endo A, Jin Tan RK, Prem K, Dickens BL.
Is Southeast Asia and the Western Pacific ready for potential monkeypox virus outbreaks?
Lancet Reg Health West Pac. 2025 Mar 29;57:101526. doi: 10.1016/j.lanwpc.2025.101526. eCollection 2025 Apr.
Jin S, Guan T, Endo A, Gan G, Janhavi A, Hu G, Ejima K, Lim JT, Dickens BL.
Effectiveness of different border control strategies for reducing mpox importation risk: a modelling study
Lancet Reg Health Southeast Asia. 2025 Mar 26;35:100565. doi: 10.1016/j.lansea.2025.100565. eCollection 2025 Apr.
Oliwa J, Guleid FH, Owek CJ, Maluni J, Jepkosgei J, Nzinga J, Were VO, Sim SY, Walekhwa AW, Clapham H, Dabak S, Kc S, Hadley L, Undurraga E, Hagedorn BL, Hutubessy RC.
Framework to guide the use of mathematical modelling in evidence-based policy decision-making
BMJ Open. 2025 Apr 5;15(4):e093645. doi: 10.1136/bmjopen-2024-093645.
Brady OJ, Bastos LS, Caldwell JM, Cauchemez S, Clapham HE, Dorigatti I, Gaythorpe KAM, Hu W, Hussain-Alkhateeb L, Johansson MA, Lim A, Lopez VK, Maude RJ, Messina JP, Mordecai EA, Peterson AT, Rodriquez-Barraquer I, Rabe IB, Rojas DP, Ryan SJ, Salje H, Semenza JC, Tran QM.
Why the growth of arboviral diseases necessitates a new generation of global risk maps and future projections
PLoS Comput Biol. 2025 Apr 4;21(4):e1012771. doi: 10.1371/journal.pcbi.1012771. eCollection 2025 Apr.
Lim JT, Mailepessov D, Chong CS, Dickens B, Lai YL, Ng Y, Lu D, Lee C, Tan LY, Chain G, Ho SH, Chang CC, Ma P, Bansal S, Lee V, Sim S, Tan CH, Ng LC.
Adjacent spillover efficacy of Wolbachia for control of dengue: emulation of a cluster randomised target trial
BMC Med. 2025 Mar 28;23(1):184. doi: 10.1186/s12916-025-03941-2.
Hope W, Nambiar S, O'Brien S, Sharland M, Paterson DL, Yin M, Gilbert IH, Ferguson M, Peacock SJ, Buchan I, Reza N, Dubey V, Darlow CA, Gerada A, Howard A; Pre-X Investigators.
Combining antibiotics to tackle antimicrobial resistance
Nat Microbiol. 2025 Apr;10(4):813-816. doi: 10.1038/s41564-025-01969-x.
Lau XMN, Zhu X, Sidhu D, Bay JW, Mo Y, Tambyah PA.
Rationalizing antibiotic prescribing for bacterial pneumonia in patients with reported penicillin allergy-a qualitative study
JAC Antimicrob Resist. 2025 Mar 13;7(2):dlaf035. doi: 10.1093/jacamr/dlaf035. eCollection 2025 Apr.
Han SM, Shiino T, Masuda S, Furuse Y, Yasaka T, Kanda S, Komori K, Saito N, Kubo Y, Smith C, Endo A, Robert A, Baguelin M, Ariyoshi K.
Phylogenetic Study of Local Patterns Influenza A(H3N2) Virus Transmission in a Semi-Isolated Population in a Remote Island in Japan Between 2011 and 2013
Influenza Other Respir Viruses. 2025 Mar;19(3):e70089. doi: 10.1111/irv.70089.
Kim S, Kang H, Skrip L, Sahastrabuddhe S, Islam A, Jung SM, Vesga JF, Endo A, Edmunds WJ, Abbas K.
Progress and challenges in Nipah vaccine development and licensure for epidemic preparedness and response
Expert Rev Vaccines. 2025 Dec;24(1):183-193. doi: 10.1080/14760584.2025.2476523. Epub 2025 Mar 11.
Busse M, Pallmann P, Riaz M, Potter C, Leggat FJ, Harris S, Longman AJ, Lowe R, Edwards A, Siriwardena AN, Sevdalis N, McRae J, Fish J, Sewell B, Jones F.
Effectiveness of a personalised self-management intervention for people living with long covid (Listen trial): pragmatic, multicentre, parallel group, randomised controlled trial
BMJ Med. 2025 Jan 31;4(1):e001068. doi: 10.1136/bmjmed-2024-001068. eCollection 2025 Jan.
Khoo YK, Wulandari S, Getchell M, Moe L, Kumar SS, Liu EJ, Sun Y, Pang J, Mishra S, Clapham H, Marais B, Sintchenko V, de Alwis R, Hipgrave D, Pronyk PM.
National investment case development for pathogen genomics
Cell Genom. 2025 Mar 12;5(3):100781. doi: 10.1016/j.xgen.2025.100781. Epub 2025 Feb 27.
Guan T, Duoduwa SE, Balakumar S, A J, Gan G, Lim JT, Dickens BL.
Evaluating strategies for global respiratory pandemic control at ports: a modelling study
BMJ Public Health. 2025 Jan 16;3(1):e001782. doi: 10.1136/bmjph-2024-001782. eCollection 2025.
Chang T, Park J, Lee W, Jung SM, Min KD, Kim H, Cho SI, Ahn S, Kim Y; AiMS-CREATE team.
Long-term exposure to fine particle air pollution associated with emergency COVID-19 hospitalizations: A nationwide retrospective Korean cohort study
Public Health. 2026 Feb 12;253:106189. doi: 10.1016/j.puhe.2026.106189. Online ahead of print.
Geng L, Whittles LK, Dickens BL, Chio MTW, Chen Y, Tan RKJ, Ghani A, Lim JT.
Potential public health impacts of gonorrhea vaccination programmes under declining incidences: A modeling study
PLoS Med. 2025 Feb 7;22(2):e1004521. doi: 10.1371/journal.pmed.1004521. eCollection 2025 Feb.
Okumu F, Moore SJ, Selvaraj P, Yafin AH, Juma EO, Shirima GG, Majambere S, Hardy A, Knols BGJ, Msugupakulya BJ, Finda M, Kahamba N, Thomsen E, Ahmed A, Zohdy S, Chaki P, DeChant P, Fornace K, Govella N, Gowelo S, Hakizimana E, Hamainza B, Ijumba JN, Jany W, Kafy HT, Kaindoa EW, Kariuki L, Kiware S, Kweka EJ, Lobo NF, Marrenjo D, Matoke-Muhia D, Mbogo C, McCann RS, Monroe A, Ndenga BA, Ngowo HS, Ochomo E, Opiyo M, Reithinger R, Sikaala CH, Tatarsky A, Takudzwa D, Trujillano F, Sherrard-Smith E.
Elevating larval source management as a key strategy for controlling malaria and other vector-borne diseases in Africa
Parasit Vectors. 2025 Feb 7;18(1):45. doi: 10.1186/s13071-024-06621-x.
Jung SM, Miura F, Murayama H, Funk S, Wallinga J, Lessler J, Endo A.
Dynamic Landscape of Mpox Importation Risks Driven by Heavy-Tailed Sexual Contact Networks Among Men Who Have Sex With Men in 2022
J Infect Dis. 2025 Feb 4;231(1):e234-e243. doi: 10.1093/infdis/jiae433.
Mo Y, Tan WC, Cooper BS.
Antibiotic duration for common bacterial infections-a systematic review
JAC Antimicrob Resist. 2025 Jan 29;7(1):dlae215. doi: 10.1093/jacamr/dlae215. eCollection 2025 Feb.
Song H, Jin S, Yang GJ, Lim NWH, Lim JT, Dickens BL.
Modelling the impact and cost-effectiveness of upcoming Zika virus vaccines on congenital Zika syndrome
Vaccine. 2025 Feb 27;48:126728. doi: 10.1016/j.vaccine.2025.126728. Epub 2025 Jan 16.
Le Breton C, Laporta GZ, Sallum MAM, Hesse H, Salgado-Lynn M, Manin BO, Fornace K.
Advancing canopy-level entomological surveillance to monitor vector-borne and zoonotic disease dynamics
Trends Parasitol. 2025 Feb;41(2):150-161. doi: 10.1016/j.pt.2024.12.009. Epub 2025 Jan 13.
Lee MH, Febriana E, Lim M, Baig S, Shen L, Dalakoti M, Chew N, Loh TP, Chan M, Chia KS, Kong AP, Cook AR, Halter JB, Magkos F, Toh SA.
Performance of the 1 h oral glucose tolerance test in predicting type 2 diabetes and association with impaired β-cell function in Asians: a national prospective cohort study
Lancet Reg Health West Pac. 2024 Dec 31;54:101278. doi: 10.1016/j.lanwpc.2024.101278. eCollection 2025 Jan.
Tusting LS, Mishra S, Gibson HS, Lindsay SW, Weiss DJ, Flaxman S, Bhatt S.
Ethnicity and anthropometric deficits in children: A cross-sectional analysis of national survey data from 18 countries in sub-Saharan Africa
PLOS Glob Public Health. 2024 Dec 31;4(12):e0003067. doi: 10.1371/journal.pgph.0003067. eCollection 2024.
Dan S, Tegegne J, Chen Y, Ling Z, Jaeger VK, Karch A, Mishra S, Ratmann O.
Towards pandemic preparedness: ability to estimate high-resolution social contact patterns from longitudinal surveys
Res Sq [Preprint]. 2024 Dec 11:rs.3.rs-5182601. doi: 10.21203/rs.3.rs-5182601/v1.
Asakura TR, Jung SM, Jin S, Hu G, Endo A, Dickens BL.
Characterising global risk profiles of Mpox clade Ib importation
J Travel Med. 2024 Dec 10;31(8):taae136. doi: 10.1093/jtm/taae136.
Baker CR, Barilar I, de Araujo LS, Parker DM, Fornace K, Moonan PK, Oeltmann JE, Tobias JL, Minin VM, Modongo C, Zetola NM, Niemann S, Shin SS.
Using genomic epidemiology and geographic activity spaces to investigate tuberculosis outbreaks in Botswana
medRxiv [Preprint]. 2024 Dec 6:2024.12.04.24318520. doi: 10.1101/2024.12.04.24318520.
Surendra H, Djaafara BA, Prameswari HD, Supriyanto D, Waluyo P, Basuki SB, Herdiana H, Ndoen E, Siswanto S, Lubis IN, Liu X, Mishra S, Fornace KM, Elyazar IR.
Mitigating risks of malaria and other vector-borne diseases in the new capital city of Indonesia
Nat Commun. 2024 Dec 5;15(1):10575. doi: 10.1038/s41467-024-54891-x.
Chow JY, Bansal S, Dickens BSL, Ma P, Hoffmann A, Cheong YL, Ahmad NW, Lim JT.
Assessing the direct and spillover protective effectiveness of Wolbachia-mediated introgression to combat dengue
EBioMedicine. 2024 Dec;110:105456. doi: 10.1016/j.ebiom.2024.105456. Epub 2024 Nov 29.
Shou Y, Yeo JE, Pang AS, Paterson DL, Mo Y.
Informed consent and risk communication challenges in antimicrobial clinical trials: a scoping review
BMJ Open. 2024 Nov 24;14(11):e082096. doi: 10.1136/bmjopen-2023-082096.
Kaur P, Ha J, Raye N, Ouwerkerk W, van Essen BJ, Tan L, Tan CK, Hum A, Cook AR, Tromp J.
A systematic review of multimorbidity clusters in heart failure: Effects of methodologies
Int J Cardiol. 2025 Feb 1;420:132748. doi: 10.1016/j.ijcard.2024.132748. Epub 2024 Nov 23.
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