Publications

Eng S, Prem K, Teo AKJ, Tuot S, Pall C, Tep S, Yi S, Ichikawa M.
Association between tuberculosis diagnosis delay and respiratory health and well-being among tuberculosis survivors in Cambodia: a prospective cohort study
BMJ Open Respir Res. 2026 Aug 28;13(1):e004413. doi: 10.1136/bmjresp-2026-004413.
Eng S, Prem K, Tuot S, Pall C, Tep S, Hoddinott G, Ichikawa M, Yi S, Teo AKJ.
Persistent respiratory, psychological, and quality-of-life impairments two-years post-tuberculosis: evidence from a cohort study in Cambodia
Eur Respir J. 2026 Jul 23:2600858. doi: 10.1183/13993003.00858-2026. Online ahead of print.
Berger DJ, Park SK, Crellen T, Vianney TJ, Kabatereine NB, Cotton JA, Sanya R, Elliott A, Tukahebwa EM, Adriko M, Standley CJ, Gouvras A, Kinung'hi S, Rabone M, Emery A, Lamberton PHL, Webster BL, Allan F, Buddenborg S, Berriman M, Marchant JS, Doyle SR, Webster JP.
Extensive parasite transmission and variation in a functional receptor associated with drug resistance in endemic Schistosoma mansoni
Sci Adv. 2026 Jul 17;12(29):eadt3721. doi: 10.1126/sciadv.adt3721. Epub 2026 Jul 17.
Fiandrino S, Paolotti D, Bay C, Chinazzi M, Davis JT, Bents SJ, Perofsky AC, Turtle J, Riley P, Ben-Nun M, Moore SM, Perkins A, Espana G, Srivastava A, Aawar MA, Bandekar SR, Bi K, Bouchnita A, Fox SJ, Meyers LA, Venkatramanan S, Porebski P, Adiga A, Lewis B, Marathe M, Haghpanah F, Klein E, Loo SL, Jung SM, Smith CP, Contamin L, Hochheiser H, Carcelén EC, Howerton E, Shea K, Yan K, Runge MC, Viboud C, Pearson CAB, Truelove S, Lessler J, Borchering RK, Biggerstaff M, Gozzi N, Vespignani A.
Adaptive multi-model ensembles for improved epidemic projections and decision support
medRxiv [Preprint]. 2026 Jun 29:2026.06.26.26356648. doi: 10.64898/2026.06.26.26356648.
Choi H, Prem K, Kwok S, Lau E, Leung GM, Jit M, Leung K, Wu JT.
The impact of public health and social measures on social contact patterns and transmission of COVID-19 in Hong Kong
BMC Med. 2026 Jun 30. doi: 10.1186/s12916-026-05041-1. Online ahead of print.
Vo KD, Ham SW, Roy M, Mishra S, Bansal P.
Uncovering latent urban mobility patterns via smart-card and survey data fusion
Nat Commun. 2026 Jun 3;17(1):7102. doi: 10.1038/s41467-026-73445-x.
Turner HC, Hung TM, Brady OJ, Velayudhan R, Dorigatti I, Clapham HE.
The cost-effectiveness of Wolbachia-based biocontrol interventions for dengue: A scoping review of the available evidence
PLoS Negl Trop Dis. 2026 Jun 1;20(6):e0014395. doi: 10.1371/journal.pntd.0014395. eCollection 2026 Jun.
Huang J, Ling Z, Roy M, Jin S, Chan JW, Tan KB, Mishra S; MLGH Network.
Evaluating age-dependent transmission and vaccination policy in Singapore’s SARS-CoV-2 epidemic: A computational modelling approach
Epidemics. 2026 Jun;55:100921. doi: 10.1016/j.epidem.2026.100921. Epub 2026 May 27.
Wang X, Ling Z, Chen X, Mishra S, Dong L.
Host-Pathogen Network and Eco-Evolutionary Drivers of Avian Influenza Transmission in Wild Birds
Ecol Lett. 2026 Jun;29(6):e70391. doi: 10.1111/ele.70391.
A J, Gan G, Endo A, Tan RKJ, Howard N, Prem K, Ho M, Jin S, Dickens BL.
Partnership-based sexual behaviours among adults in Singapore: a cross-sectional population survey
BMJ Public Health. 2026 May 12;4(2):e004042. doi: 10.1136/bmjph-2025-004042. eCollection 2026.
Carson J, Crellen T, Borlase A, Prada JM, Bailey R, Hollingsworth TD, Spencer SEF.
Dynamics of trachoma infection in West Africa revealed by a hidden state model
PLoS Comput Biol. 2026 May 20;22(5):e1014313. doi: 10.1371/journal.pcbi.1014313. eCollection 2026 May.
Genova P, Chuan VT, Theparod T, Pan-Ngum W, Ong SE, Tam C, Dickens BL, Lim JM.
Trusting science and authority in times of crisis: exploring vaccine confidence across Southeast Asia
BMJ Public Health. 2026 Apr 27;4(2):e003617. doi: 10.1136/bmjph-2025-003617. eCollection 2026.
Chaw L, Koh KS, Rosledzana MA, Cook AR, Wong J.
Factors associated with onward SARS-CoV-2 transmission among household and dormitory contacts of cases in Brunei Darussalam, August 2021 to February 2022: A retrospective cohort study
IJID Reg. 2026 Apr 1;19:100888. doi: 10.1016/j.ijregi.2026.100888. eCollection 2026 Jun.
Skrip L, Hidano A, Poovorawan Y, Khongwichit S, Kato H, Kapell S, Abe M, Jung SM, Jit M, Kim KH, Yi J, Miyazaki T, Kawaguchi T, Okabayashi T, Chae JS, Ariyoshi K, Edmunds WJ, Morita K.
Vaccine value profile for severe fever with thrombocytopenia syndrome (SFTS)
Vaccine. 2026 May 22;82:128596. doi: 10.1016/j.vaccine.2026.128596. Epub 2026 Apr 20.
Nande A, Larsen SL, Turtle J, Davis JT, Bandekar SR, Lewis B, Chen S, Contamin L, Jung SM, Howerton E, Shea K, Bay C, Ben-Nun M, Bi K, Bouchnita A, Chen J, Chinazzi M, Fox SJ, Hill AL, Hochheiser H, Lemaitre JC, Loo SL, Marathe M, Meyers LA, Pearson CAB, Porebski P, Przykucki E, Smith CP, Venkatramanan S, Vespignani A, Willard TC, Yan K, Viboud C, Lessler J, Truelove S.
Assessing the Impact of Timing and Coverage of United States COVID-19 Vaccination Campaigns: A Multi-Model Approach
medRxiv [Preprint]. 2026 Apr 8:2026.04.07.26349269. doi: 10.64898/2026.04.07.26349269.
Bialic A, Crellen T, Wangwiwatsin A, Albuquerque-Wendt A, Rajbhandari P, Manandhar R, Bastola S, Adamson W, Veitch N, Macleod A, Musaya J, Cortuna M, Kugler M, Waters AP.
Utilizing the power of public engagement in parasitology: A retrospective
J Parasitol. 2026 Apr 20;112(2):226-240. doi: 10.1645/25-15.
McCain K, Topazian HM, Challenger JD, Okell L, Winskill P, Ghani AC.
Public health impact of catch-up vaccination or additional booster doses with pre-erythrocytic malaria vaccine R21/Matrix-M: a modelling study
BMC Med. 2026 Mar 25;24(1):286. doi: 10.1186/s12916-026-04822-y.
Lee VJ, Yap J, Cook AR, Chen MI, Tay JK, Tan BH, Loh JP, Chew SW, Koh WH, Lin R, Cui L, Lee CW, Sung WK, Wong CW, Hibberd ML, Kang WL, Seet B, Tambyah PA.
TRPtracker: a community database for monitoring praziquantel sensitivity at TRPM(PZQ) variants
N Engl J Med. 2010 Jun 10;362(23):2166-74. doi: 10.1056/NEJMoa0908482.
Jirapanakorn S, Hunsin B, Endo A, Lee C, Jin S, Dickens BL, Thiparod T.
How to utilise the limited supply of vaccines for Mpox control in Thailand among high-risk GBMSM
Infect Dis Model. 2026 Mar 4;11(3):1009-1021. doi: 10.1016/j.idm.2026.03.002. eCollection 2026 Sep.
Djaafara BA, Elyazar IRF, Silalahi FSM, Surya A, Handito A, Thohir B, Aryani D, Kamal M, Ramadona AL, Gunawan D, Hipokrates, Khoirun Nisa A, Prianto E, Samad I, Sugiarto A, Fornace K, Clapham HE, Faria NR, Mishra S.
Dengue transmission heterogeneity across Indonesia’s archipelago: Climate-driven spatiotemporal patterns and policy implications
PLoS Negl Trop Dis. 2026 Mar 17;20(3):e0014135. doi: 10.1371/journal.pntd.0014135. eCollection 2026 Mar.
Pradana A, Oktaviani M, Prameswari H, Supriyanto D, Waluyo P, Ndoen E, Rosadi D, Lubis I, Suwarti S, Subekti D, Kusumaningrum T, Carroll M, Djaafara B, de Alwis R, Mishra S, Drakeley C, Leder K, Lechner A, Fornace K, Elyazar I, Surendra H.
A study protocol for a baseline community-based cross-sectional study to investigate malaria and dengue transmission dynamics in a development area of new capital city, Indonesia
Wellcome Open Res. 2026 Feb 3;11:89. doi: 10.12688/wellcomeopenres.25303.1. eCollection 2026.
Senapati A, Thein TL, Leo YS, Clapham HE.
Adult dengue vaccination in a low transmission setting: A modelling study in Singapore
PLoS Negl Trop Dis. 2026 Mar 2;20(3):e0014062. doi: 10.1371/journal.pntd.0014062. eCollection 2026 Mar.
Chang T, Park J, Lee W, Jung SM, Min KD, Kim H, Cho SI, Ahn S, Kim Y; AiMS-CREATE team.
Long-term exposure to fine particle air pollution associated with emergency COVID-19 hospitalizations: A nationwide retrospective Korean cohort study
Public Health. 2026 Apr;253:106189. doi: 10.1016/j.puhe.2026.106189. Epub 2026 Feb 12.
Lim JT, Chong CS, Chang CC, Mailepessov D, Dickens B, Lai YL, Deng L, Lee C, Tan LY, Chain G, Zulkifli MF, Liew JWK, Vasquez K, Chau ML, Ng Y, Lee V, Wong JCC, Sim S, Tan CH, Ng LC; Project Wolbachia–Singapore Consortium.
Dengue Suppression by Male Wolbachia-Infected Mosquitoes
N Engl J Med. 2026 Mar 26;394(12):1175-1183. doi: 10.1056/NEJMoa2503304. Epub 2026 Feb 11.
Jin S, Jung SM, Gan G, Endo A, Lim JT, Dickens BL.
Spatiotemporal dynamics of chikungunya transmission in Foshan City, China: A modelling analysis
Int J Infect Dis. 2026 Mar;164:108358. doi: 10.1016/j.ijid.2025.108358. Epub 2025 Dec 28.
Wee LE, Tan WZ, Chow JY, Lim JT, Chiew C, Chia PY, Dickens B, Ng LC, Ong B, Leo YS, Lye DC, Tan KB.
Neurological Events Associated With Acute Dengue Infection
JAMA Neurol. 2026 Feb 1;83(2):171-180. doi: 10.1001/jamaneurol.2025.4608.
Lim JT, Chong CS, Chang CC, Mailepessov D, Dickens B, Lai YL, Deng L, Lee C, Tan LY, Chain G, Zulkifli MF, Liew JWK, Vasquez K, Chau ML, Ng Y, Lee V, Wong JCC, Sim S, Tan CH, Ng LC; Project Wolbachia-Singapore Consortium.
Dengue Suppression by Male Wolbachia-Infected Mosquitoes
N Engl J Med. 2026 Feb 11. doi: 10.1056/NEJMoa2503304. Online ahead of print.
Thompson RN, Bansal S, Clapham H, Dyson L, Gutierrez MA, Hadley L, Hart WS, Heesterbeek H, Hollingsworth TD, House T, Howerton E, Isham V, Lessler J, Leung K, Li X, McBryde E, McCaw JM, Mollison D, Pan-Ngum W, Parag K, Pellis L, Scarabel F, Swallow B, Thumbi SM, Tran-Kiem C, Viboud C, Plank MJ.
Infectious disease outbreak controllability: biological, social and public health factors
Proc Biol Sci. 2026 Jan 28;293(2063):20252848. doi: 10.1098/rspb.2025.2848.
Monoi A, Endo A, Procter SR, Leuba SI, Flasche S, Jit M; Maternal RSV Vaccine Benefit-Risk Advisory Group.
The benefits and risks of maternal RSV vaccination on mortality in South Africa: A modeling study
PLoS Med. 2026 Jan 20;23(1):e1004625. doi: 10.1371/journal.pmed.1004625. eCollection 2026 Jan.
Choo ELW, Ma P, Chow JY, Yim SH, Brady O, Dickens BL, Lim JT.
Projecting long-term excess risks of major infectious diseases associated with future extreme weather events in Thailand
PLoS Negl Trop Dis. 2026 Jan 5;20(1):e0013896. doi: 10.1371/journal.pntd.0013896. eCollection 2026 Jan.
Yap AJW, Ponce LJ, Wee LE, Dickens B, Lye DCB, Tan KB, Lim JT.
Effectiveness of mobile vaccination teams to increase COVID-19 booster uptake in Singapore: a population-based synthetic control study
BMC Glob Public Health. 2026 Jan 2;4(1):3. doi: 10.1186/s44263-025-00233-y.
Wee LE, Tan WZ, Chow JY, Lim JT, Chiew C, Chia PY, Dickens B, Ng LC, Ong B, Leo YS, Lye DC, Tan KB.
Neurological Events Associated With Acute Dengue Infection
JAMA Neurol. 2026 Feb 1;83(2):171-180. doi: 10.1001/jamaneurol.2025.4608.
Jin S, Asakura TR, Murayama H, Jung SM, Niyukuri D, Nyandwi J, Nkengurutse L, Kamatari O, Lim JT, Endo A, Dickens BL.
Disentangling Temporal Trends of Clade Ib Monkeypox Virus Transmission in Burundi
J Infect Dis. 2026 Jan 17;233(1):e140-e144. doi: 10.1093/infdis/jiaf475.
Kang H, Lim A, Clark A, Colón González FJ, Clapham HE, Carrera JP, Kim JH, Auzenbergs M, Lakshminarayanan P, López-Vergès S, Sim SY, Han SM, Cerqueira-Silva T, Endy T, Cucunubá ZM, Edmunds WJ, Sahastrabuddhe S, Brady OJ, Abbas K.
Age-specific chikungunya outbreak response immunisation strategies in Brazil: a modelling study
EClinicalMedicine. 2025 Dec 5;90:103690. doi: 10.1016/j.eclinm.2025.103690. eCollection 2025 Dec.
Ngiam JN, Koh MCY, Tung G, Mo Y.
Current Options for the Treatment of Invasive Infections Caused by Carbapenem-Resistant Enterobacterales
Infect Dis Clin North Am. 2025 Dec 23:S0891-5520(25)00103-5. doi: 10.1016/j.idc.2025.11.009. Online ahead of print.
Xie Y, Srivastava IM, Jing F, Ma C, Wu X, Chen Y, Du Y, Low XC, Ping Y, Pan J, Gupta A, Graves N, Mo Y.
One health perspective of antibiotic resistance in enterobacterales from Southeast Asia: a systematic review and meta-analysis
Sci Rep. 2025 Dec 18;16(1):1694. doi: 10.1038/s41598-025-31195-8.
Tan JXR, Kurupatham L, Said Z, Chan J, Tan KB, Ho M, Lee V, Cook AR.
Comparison of contact tracing methods: A modelling study
Infect Dis Model. 2025 May 16;10(3):1020-1032. doi: 10.1016/j.idm.2025.05.007. eCollection 2025 Sep.
Yong M, Low WW, Mishra S, Williams G, Mileto S, Lim C, Chwa C, Oo G, Cheam G, Chen Y, Chung The H, Pham TD, Lyras D, Gan YH.
Differential gut transmission of IncP plasmid clades involving hypervirulent Klebsiella pneumoniae reveals plasmid-specific ecological adaptation
Nat Commun. 2025 Dec 10;16(1):11353. doi: 10.1038/s41467-025-66413-4.
Tian Z, Chhoun P, Tuot S, Yam LYE, Nagashima-Hayashi M, Zahari M, Choub SC, Sameth S, Ngauv B, Ouk V, Teo AKJ, Prem K, Yi S.
Impact of a community-based antiretroviral therapy delivery model for people living with HIV in Cambodia
Nat Commun. 2025 Nov 25;16(1):11612. doi: 10.1038/s41467-025-66606-x.
Djaafara B, Elyazar IRF, Surya A, Silalahi FSM, Handito A, Aryani D, Kamal M, Gunawan D, Hipokrates H, Nisa AK, Prianto E, Samad I, Sugiarto A, Thohir B, Clapham H, Mishra S.
Estimating dengue force of infection from age-stratified surveillance data in Java, Indonesia
J R Soc Interface. 2025 Nov;22(232):20250445. doi: 10.1098/rsif.2025.0445. Epub 2025 Nov 26.
Wee LE, Lim JT, Tay AT, Dickens B, Ma P, Chiew C, Chia PY, Leo YS, Ng LC, Lye DC, Tan KB.
Risk of dengue following prior SARS-CoV-2 infection: a population-based cohort study
Lancet Reg Health West Pac. 2025 Nov 7;64:101727. doi: 10.1016/j.lanwpc.2025.101727. eCollection 2025 Nov.
Finch E, Chang CC, Kucharski A, Sim S, Ng LC, Lowe R.
Climate variation and serotype competition drive dengue outbreak dynamics in Singapore
Nat Commun. 2025 Nov 22;16(1):11364. doi: 10.1038/s41467-025-66411-6.
Aviso M, Tay WD, Farwin A, Durrance-Bagale A, Lam ST, Nagashima-Hayashi M, Jacob-Chow B, Marzouk M, Liew JWK, Clapham H, Howard N.
“Basically a PR exercise…”: a qualitative study of expert perspectives on ‘performative versus evidence-informed’ dengue vector control in the Asia-Pacific region
BMJ Glob Health. 2025 Nov 16;10(11):e019723. doi: 10.1136/bmjgh-2025-019723.
Roy M, Clapham HE, Mishra S.
Incorporating human mobility to enhance epidemic response and estimate real-time reproduction numbers
PLoS Comput Biol. 2025 Nov 13;21(11):e1013642. doi: 10.1371/journal.pcbi.1013642. eCollection 2025 Nov.
Tan EJ, Chong C, Yap A, Chiew C, Tan S, Yang Y, Tan K, Lye D, Cook A, Lee V.
Impact of Vaccination-Differentiated Public Health and Social Measures on Vaccine Uptake Among the Vaccine Hesitant
AJPM Focus. 2025 Aug 20;5(1):100419. doi: 10.1016/j.focus.2025.100419. eCollection 2026 Feb.
Valverde HA, Yacapin CC, Pasco PMD, Real JOM, Lopez JCF, Clapham HE, Chew YZ, Mercado CEG, Botwright S, Silzle M, Lam HY.
Cost-Effectiveness Analysis of Various Coronavirus Disease (COVID-19) Vaccines against Emerging Variants of Concern in the Philippines
Acta Med Philipp. 2025 Sep 30;59(14):37-48. doi: 10.47895/amp.v59i14.9631. eCollection 2025.
Romanello M, Walawender M, Hsu SC, Moskeland A, Palmeiro-Silva Y, Scamman D, Smallcombe JW, Abdullah S, Ades M, Al-Maruf A, Ameli N, Angelova D, Ayeb-Karlsson S, Ballester J, Basagaña X, Bechara H, Beggs PJ, Cai W, Campbell-Lendrum D, Charnley GEC, Courtenay O, Cross TJ, Dalin C, Dasandi N, Dasgupta S, Davies M, Eckelman M, Freyberg C, Corral PG, Gasparyan O, Giguere J, Gordon-Strachan G, Gumy S, Gunther SH, Hamilton I, Hang Y, Hänninen R, Hartinger S, He K, Heidecke J, Hess JJ, Jankin S, Jay O, Pantera DK, Kelman I, Kennard H, Kiesewetter G, Kinney P, Kniveton D, Koubi V, Kouznetsov R, Lampard P, Lee JKW, Lemke B, Li B, Linke A, Liu Y, Liu Z, Lowe R, Ma S, Mabhaudhi T, Maia C, Markandya A, Martin G, Martinez-Urtaza J, Maslin M, McAllister L, McMichael C, Mi Z, Milner J, Minor K, Minx J, Mohajeri N, Momen NC, Moradi-Lakeh M, Morrisey K, Munzert S, Murray KA, Obradovich N, Orgen P, Otto M, Owfi F, Pearman OL, Pega F, Pershing AJ, Pinho-Gomes AC, Ponmattam J, Rabbaniha M, Repke T, Roa J, Robinson E, Rocklöv J, Rojas-Rueda D, Ruiz-Cabrejos J, Rusticucci M, Salas RN, Plana ASJ, Semenza JC, Sherman JD, Shumake-Guillemot J, et al.
The 2025 report of the Lancet Countdown on health and climate change: climate change action offers a lifeline
Lancet. 2025 Dec 13;406(10521):2804-2857. doi: 10.1016/S0140-6736(25)01919-1. Epub 2025 Oct 29.
Crellen T, Vita F, Braconi C, Sithithaworn P, Hollingsworth TD.
Natural history of liver fluke infection underpins epidemiological patterns of biliary cancer
Proc Natl Acad Sci U S A. 2025 Oct 14;122(41):e2423536122. doi: 10.1073/pnas.2423536122. Epub 2025 Oct 10.
Watson OJ, Tran TN, Zupko RJ, Symons T, Thomson R, Visser T, Rumisha S, Dzianach PA, Hathaway N, Kim I, Juliano JJ, Bailey JA, Slater H, Okell L, Gething P, Ghani A, Boni MF, Parr JB, Cunningham J.
Global risk of selection and spread of Plasmodium falciparum histidine-rich protein 2 and 3 gene deletions
Nat Med. 2025 Oct;31(10):3372-3379. doi: 10.1038/s41591-025-03974-3. Epub 2025 Oct 6.
Kang H, Lim A, Auzenbergs M, Clark A, Colón-González FJ, Salje H, Clapham H, Carrera JP, Kim JH, Malarski M, López-Vergès S, Cucunubá ZM, Cerqueira-Silva T, Edmunds WJ, Sahastrabuddhe S, Brady OJ, Abbas K.
Global, regional and national burden of chikungunya: force of infection mapping and spatial modelling study
BMJ Glob Health. 2025 Oct 1;10(10):e018598. doi: 10.1136/bmjgh-2024-018598.
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